First Gene kills Logan with her telekinetic powers by asking him to remove his glasses telling him he can control the power of his eyes. She kills him using his own energy. Then off to DC where the government has found a cure for the mutant gene. They are trying to round up X-men both good and bad and kill the mutant in them. It’s a famous serious for portraying the misunderstanding of authority for new ideas.
In response to this Magneto organizes an army with the help of Phoenix/Gene to fight the humans. Then the professor goes to see Magneto and almost dies. Logan and the Blue Bear kill Magneto. Logan then fights Magneto, but many people die in the fire.
Logan kills Phoenix, but only after Gene begs for her life but he kills her to release Gene from Phoenixes Grip.
Hank McCoy or the Blue Teddy is back at the UN. The world is now safe for the mutents one again. People are respecting others, but for how long?
The last scene is Magneto playing chess with himself. What he used to do with his life long friend Xavier.
